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usr/bin/ld: nc4file.c:(.text+0x175): undefined reference to `H5open'
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usr/bin/ld: nc4file.c:(.text+0x143): undefined reference to `H5Tequal' usr/bin/ld: nc4file.c:(.text+0x134): undefined reference to `H5T_NATIVE_SHORT_g' usr/bin/ld: nc4file.c:(.text+0x12d): undefined reference to `H5open' usr/bin/ld: nc4file.c:(.text+0xfb): undefined reference to `H5Tequal' usr/bin/ld: nc4file.c:(.text+0xec): undefined reference to `H5T_NATIVE_SCHAR_g' usr/bin/ld: nc4file.c:(.text+0xe5): undefined reference to `H5open' usr/bin/ld: nc4file.c:(.text+0x97): undefined reference to `H5Tis_variable_str' Nc4file.c:(.text+0x72): undefined reference to `H5Tget_class' usr/bin/ld: /home/user/Library/netcdf/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): in function `get_netcdf_type': Nc4file.c:(.text+0x1b): undefined reference to `H5free_memory' usr/bin/ld: /home/user/Library/netcdf/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): in function `hdf5free':
SIMPLY FORTRAN 2.11 SERIAL SERIAL
While when serial GNU option is used to compile WRFV4.0, the errors prompted: configure -prefix=/usr/local/lib/netcdf -disable-dap –enable-netcdf-4, NETCDF C library with enable-netcdf option can be successfully installed in my UBUNTU desktop. (2) If I choose to use enable-netcdf4 option. The wrfout file can not be read by ncdump&ncl_filedump, but they can be opened by ncview. *** ncdump: ncopen failed on ncl_filedump wrfout_d01_12\:00\:00.nc > zz.h When reading wrfout files, it prompted errors as ncdump -h wrfout_d01_12\:00\:00 > zz.h However, I have met a problem with ncdump & ncl_filedump. configure -prefix=/usr/local/lib/netcdf -disable-dap -disable-netcdf-4 –disable-shared, WRFV4.0 can be compiled. (1) If I choose to use disable-netcdf4 option when installing NETCDF C library. configure -prefix=/usr/local/lib/netcdf -enable-fortran -enable-large-file-testĬompile. (1.4 MiB) Downloaded 39 times =>cd /home/lsl/Downloads/SOFT/INSTALL_WRF/Libraries/netcdf-fortran-4.4.4 configure -with-hdf5=/usr/local/lib/hdf5-1.10.4/ -with-zlib=/usr/local/lib/zlib-1.2.11 -prefix=/usr/local/lib/netcdf -disable-shared -disable-dap -enable-netcdf-4Ĭd ~/Downloads/WRF-INSTALL/netcdf-fortran-4.4.4 I am using the following scripts for installing netcdf:Ĭd /home/lsl/Downloads/SOFT/INSTALL_WRF/Libraries/netcdf-4.6.1 It seems something relative to Netcdf HDF5 support. Nc4file.c:(.text+0x479c): undefined reference to `H5Pclose' Nc4file.c:(.text+0x475d): undefined reference to `H5Pclose' Nc4file.c:(.text+0x46e9): undefined reference to `H5Fopen' Nc4file.c:(.text+0x46a3): undefined reference to `H5LTopen_file_image' Nc4file.c:(.text+0x466e): undefined reference to `H5Pset_cache' Nc4file.c:(.text+0x4633): undefined reference to `H5Pset_fclose_degree' Nc4file.c:(.text+0x460b): undefined reference to `H5Pcreate' Nc4file.c:(.text+0x4603): undefined reference to `H5P_CLS_FILE_ACCESS_ID_g' Nc4file.c:(.text+0x45fc): undefined reference to `H5open' Nc4file.c:(.text+0x453d): undefined reference to `H5open' Nc4file.c:(.text+0x4538): undefined reference to `H5check_version' Nc4file.c:(.text+0x451d): undefined reference to `H5open' Nc4file.c:(.text+0x4518): undefined reference to `H5check_version' usr/local/lib/netcdf/lib/libnetcdf.a(libnetcdf4_la-nc4file.o): In function `nc4_open_file': compile em_real &> compile.log, there is always errors for H5* as follows: I am writing for a problem when compiling wrf and wrfchem.